I use a 100 yards, that scope has no issues reaching the distances you listed from a 100 yard zero so there is no reason not to use.
In the past people used zeroes at varying distances for different reasons, most of those reasons revolved around the fact the scopes didn't work across the entire range. So they had to modify where they set their zero. Either that or they wanted to try and shoot without actually adjusting anything or utilizing the reticle correctly to properly hold from a 100 yard zero. So they zeroed in a place that allowed them to "hold a little high or little low" staying as close to the center of the reticle as possible.
Today we have much better technology, we have canted based (something they didnt have in the past ) and scopes with a lot of elevation. The ATACR has about 140 Minutes of elevation, that is a ton. The 338LM from 100 yards only needs about 27 to 30 MOA adjustment to reach 1000 yards from 100. So you have a lot left over to reach 1 mile. Use the scope as it was intended, zero it at 100 yards, set the zero stop and because you are shooting at distance it should give you plenty of time and opportunity to dial in your elevation giving you a consistent hold at extended distances.
Using the right equipment means you don't have to compromise, and zeros beyond 100 yards are a compromise.