Is there a way to remove flush cups without completely killing the stock?
Not concerned with filling the hole afterwards, just fill up with some marine-tex /devcon, sand flush and repaint.
Clean and de-grease the interior of the cups.
Use a soldering gun on a relatively High setting.
Place the tip of the iron into the bottom of the Flush Cup. Be sure to make solid contact with the bottom of the cup and not the stock material through the large hex drive.
Activate trigger full heat onto the bottom of the cup for about 60 seconds.
Most flush cup installations are done with some type of epoxy on the threads of the cup. It is normal see some light smoke as this epoxy heats and starts to break down.
After 60 or so seconds, remove heat (be F'ing careful where you lay the hot soldering gun) and immediately engage the bottom of the flush cup with a T-handle hex driver and turn (Lefty Loosey) it out of the stock.
The cup is going to be really hot so have a spot to drop it as well.
You should be able to brush out any epoxy residue and/or crumbled stock material from the hole to clean it up and prep for whatever you are doing next.
I have used this on literally hundreds of old flush cups converting to new limited rotation cups as part of upgrades to rifles rotating back in here for re-builds.
../